2nd VIETNAM SCHOOL OF BIOLOGY
Genomic analysis of microbial pathogens using illumina and Nanopore sequencing
December 9-11, 2023, ICISE, Quy Nhon, Vietnam
Registration deadline: October 20, 2023
December 9-11, 2023, ICISE, Quy Nhon, Vietnam
Registration deadline: October 20, 2023
School Agenda
| Day 1, 9th December, 2023 | ||
| 9:00 - 9:30 | Welcome & Opening Session | Assoc. Prof. Nguyen Bao Quoc, Nong Lam University & Dr. Nguyen Cuong, LOBI |
| 9:30 – 10:15 | Keynote 1: Introduction to second- and third generation sequencing technologies and applications | Assoc. Prof. Ho Huynh Thuy Duong, University of Science, VNUHCM |
| 10:15 – 11:00 | Keynote 2: Multidrug resistance plasmids underlie clonal expansions and international spread of Salmonella enterica serotype 1,4,[5]:12,i:- ST34 in Southeast Asia. | Dr. Chung The Hao, OUCRU |
| 11:00 – 11:15 | Coffee break | |
| 11:15 – 12:00 | Introduction to Oxford Nanopore Technologies | BCE Vietnam |
| 12:00 – 13:30 | Lunch break | ICISE, Quy Nhon City |
| 13:30 – 17:30 | Practical session: - Introduction to sample preparation & sequencing procedure - Pore checking - Library preparation - Sample loading - Monitoring sequencing by MinKNOW - Basecalling |
BCE Vietnam |
| Day 2, 10th December, 2023 | ||
| 9:00 – 12:00 | QC raw read Assembly short reads only Assembly long reads only Hybrid Assembly short+long reads QC draft genomes |
Dr. Vu Minh Thiet & Dr. Do Hoang Dang Khoa, Nguyen Tat Thanh University |
| 12:00 – 13:30 | Lunch break | ICISE, Quy Nhon City |
| 13:30 – 13:45 | Overview of studied bacteria | Dr. Nguyen Thuy Vy, University of Sciences, VNUHCM |
| 13:45 – 14:45 | Gen prediction & Genome annotation | Dr. Tran Thi Thanh Tam, University of Science and Technology of Hanoi (USTH), VAST |
| 14:45 – 15:00 | Coffee break | |
| 15:00 – 16:00 | Gen prediction & Genome annotation (cont.) | Dr. Tran Thi Thanh Tam, USTH, VAST |
| 16:00 – 16:30 | Keynote 3: Bioinformatics developments for the analysis of bacterial genomics with a focus on AMR | Dr. Juliette Hayer, IRD |
| 16:30 – 17:00 | Keynote 4: Bacterial antimicrobial resistance transmission events across one-health compartments: Case study and way forward | Dr. Etienne Loire, CIRAD |
| 17:00 – 18:00 | Round discussion (Network and Future Direction of VSOB) Q&A | Assoc.Prof.Dr. Nguyen Bao Quoc Nong Lam University Dr. Nguyen Cuongbr> LOBI, VAST |
| 18:00 -18:30 | Cocktail banquet | |
| 18:30 – 20:30 | GALA dinner | |
| 20:30 | Returning to Seagull Hotel by shutter Buses | |
| Day 3, 11th December, 2023 | ||
| 8:30 – 9:00 | Keynote 5: Enhancing fungal identification in environmental and clinical samples | Dr. Dương Vũ, Westerdijk Fungal Biodiversity Institute, The Netherlands |
| 9:00 – 9:30 | Keynote 6: Non-classical Insights through understanding the Pathogen Genome architecture | Assoc.Prof. Dr. Rajesh Pandey - CSIR-IGIB, New Delhi, India |
| 9:30 - 9:45 | Coffee break | |
| 9:45 - 11:15 | Comparative genomics | Dr. Nguyen Thuy Vy, University of Sciences, VNUHCM |
| 11:15 - 12:00 | Closing ceremony | |
| 12:00 – 13:30 | Lunch break | ICISE, Quy Nhon City |
| 13:00 – 18:00 | Quy Nhon tour/Depart from Quy Nhon | Optional and pay fee (TBA) |